OBO Foundry dashboard analysis¶

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/tmp/ipykernel_3329/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            19
RDF/XML Syntax    18
unknown            4
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 37 5355.285714 19151.883387 0.0 150.0 999.5 3312.50 124680.0
Declaration 37 1123.095238 3503.585709 0.0 58.5 250.5 877.00 22818.0
SubClassOf 35 1263.095238 3808.441797 0.0 13.0 244.5 1069.75 24611.0
ObjectPropertyDomain 33 27.880952 31.821302 0.0 6.0 22.0 27.50 133.0
ObjectPropertyRange 33 30.214286 33.275301 0.0 6.5 24.0 31.50 144.0
DataPropertyRange 29 11.261905 20.526080 0.0 0.0 2.5 10.75 97.0
SubObjectPropertyOf 27 39.904762 55.480961 0.0 0.0 12.0 55.00 214.0
InverseObjectProperties 27 11.738095 27.178775 0.0 0.0 2.0 10.50 126.0
ClassAssertion 26 157.119048 430.833067 0.0 0.0 2.0 39.00 1952.0
DataPropertyDomain 26 10.785714 36.708832 0.0 0.0 2.0 4.75 235.0
DisjointClasses 26 305.190476 1892.563731 0.0 0.0 2.5 15.25 12277.0
EquivalentClasses 23 59.190476 102.276821 0.0 0.0 5.0 66.75 395.0
TransitiveObjectProperty 21 3.119048 4.373994 0.0 0.0 0.5 5.00 15.0
SubAnnotationPropertyOf 17 11.166667 35.435215 0.0 0.0 0.0 13.00 228.0
SubDataPropertyOf 15 5.142857 11.993029 0.0 0.0 0.0 2.75 63.0
FunctionalDataProperty 15 1.190476 1.990687 0.0 0.0 0.0 2.00 8.0
FunctionalObjectProperty 15 2.142857 3.619537 0.0 0.0 0.0 2.75 11.0
SymmetricObjectProperty 14 2.714286 4.728150 0.0 0.0 0.0 4.25 16.0
InverseFunctionalObjectProperty 13 1.595238 3.231397 0.0 0.0 0.0 1.00 12.0
AnnotationPropertyRangeOf 13 6.309524 21.197662 0.0 0.0 0.0 1.00 134.0
ObjectPropertyAssertion 12 354.214286 1601.270449 0.0 0.0 0.0 2.00 10226.0
IrrefexiveObjectProperty 12 2.928571 6.134242 0.0 0.0 0.0 1.00 22.0
AsymmetricObjectProperty 10 2.285714 5.023291 0.0 0.0 0.0 0.00 16.0
DisjointUnion 7 6.071429 19.651094 0.0 0.0 0.0 0.00 116.0
DataPropertyAssertion 7 146.642857 584.884555 0.0 0.0 0.0 0.00 3617.0
AnnotationPropertyDomain 6 0.285714 0.994760 0.0 0.0 0.0 0.00 6.0
EquivalentObjectProperties 6 1.523810 5.781544 0.0 0.0 0.0 0.00 36.0
DifferentIndividuals 5 0.428571 1.364048 0.0 0.0 0.0 0.00 6.0
DisjointObjectProperties 5 0.476190 1.611515 0.0 0.0 0.0 0.00 8.0
SubPropertyChainOf 5 0.880952 2.898295 0.0 0.0 0.0 0.00 13.0
ReflexiveObjectProperty 5 0.119048 0.327770 0.0 0.0 0.0 0.00 1.0
SameIndividual 3 0.738095 2.980093 0.0 0.0 0.0 0.00 17.0
NegativeObjectPropertyAssertion 2 0.047619 0.215540 0.0 0.0 0.0 0.00 1.0
Rule 2 0.285714 1.366600 0.0 0.0 0.0 0.00 8.0
EquivalentDataProperties 2 0.214286 0.976198 0.0 0.0 0.0 0.00 5.0
DatatypeDefinition 2 0.476190 2.932061 0.0 0.0 0.0 0.00 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 38 4493.214286 11870.124415 0.0 116.0 911.5 4932.00 70987.0
ObjectUnionOf 27 15.904762 23.308964 0.0 0.0 5.5 20.75 88.0
ObjectAllValuesFrom 25 32.023810 68.448481 0.0 0.0 5.5 39.50 400.0
ObjectIntersectionOf 22 37.642857 98.304113 0.0 0.0 1.0 19.75 470.0
ObjectSomeValuesFrom 22 150.547619 324.839713 0.0 0.0 6.0 115.00 1478.0
ObjectExactCardinality 20 8.190476 24.782210 0.0 0.0 0.0 3.75 115.0
DataExactCardinality 16 2.285714 3.896751 0.0 0.0 0.0 3.00 14.0
DataHasValue 14 34.214286 86.136176 0.0 0.0 0.0 7.00 494.0
DataAllValuesFrom 12 1.023810 2.005944 0.0 0.0 0.0 1.00 8.0
ObjectComplementOf 11 2.214286 5.172798 0.0 0.0 0.0 0.75 22.0
ObjectOneOf 10 17.761905 63.232752 0.0 0.0 0.0 0.00 272.0
ObjectHasValue 10 11.238095 37.361653 0.0 0.0 0.0 0.00 189.0
ObjectMinCardinality 9 0.976190 2.551787 0.0 0.0 0.0 0.00 11.0
DataSomeValuesFrom 7 0.619048 1.413392 0.0 0.0 0.0 0.00 4.0
ObjectMaxCardinality 5 22.238095 137.881853 0.0 0.0 0.0 0.00 894.0
DataMinCardinality 3 0.380952 2.163470 0.0 0.0 0.0 0.00 14.0
DataMaxCardinality 3 1.904762 9.704938 0.0 0.0 0.0 0.00 61.0

OBO Score (Experimental)

ontology score score_dash score_impact
24 OBO 0.345 0.571 0.119
13 FOAF 0.309 0.333 0.286
15 IAO 0.300 0.600 0.000
0 AMONTOLOGY 0.285 0.571 0.000
18 MDO 0.285 0.571 0.000
38 enanomapper 0.285 0.571 0.000
25 OEO 0.285 0.571 0.000
28 PROVO 0.276 0.504 0.048
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
29 QUDT 0.275 0.549 0.000
9 EMMO_BattINFO 0.275 0.549 0.000
11 EMMO_crystallography 0.275 0.549 0.000
3 CCO 0.252 0.504 0.000
31 SEMMD 0.252 0.504 0.000
10 EMMO_atomistic 0.252 0.504 0.000
12 EMMO_mappings 0.252 0.504 0.000
30 SAREF 0.241 0.482 0.000
22 NPO 0.234 0.467 0.000
26 OM 0.234 0.467 0.000
36 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
34 SP 0.234 0.467 0.000
17 MAMBO 0.234 0.467 0.000
33 SO 0.234 0.467 0.000
23 OA 0.222 0.444 0.000
39 mvc 0.222 0.444 0.000
27 PMD 0.222 0.444 0.000
21 MaterialsMine 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
19 MSEO 0.222 0.444 0.000
14 GPO 0.222 0.444 0.000
20 MatOnto 0.222 0.444 0.000
37 WILD 0.200 0.400 0.000
40 periodictable 0.200 0.400 0.000
32 SKOS_MDO 0.200 0.400 0.000
35 SSN 0.189 0.378 0.000
41 ssos 0.155 0.311 0.000
16 LPBFO 0.000 0.000 0.000
5 CIF 0.000 0.000 0.000
2 BWMD-MID 0.000 0.000 0.000
1 BWMD-DOMAIN 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 42.0 0.222667 0.081261 0.0 0.222 0.234 0.27500 0.345
score_dash 42.0 0.434405 0.156805 0.0 0.444 0.467 0.53775 0.600
score_impact 42.0 0.010786 0.047723 0.0 0.000 0.000 0.00000 0.286

OBO dependency graph